Transcript: LINC00578:5

Basic information

LNCipedia transcript ID: LINC00578:5 
LNCipedia gene ID: LINC00578
Location (hg38): chr3:177539179-177547247
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1605 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT093348; FPKM1_group_22473_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.7293 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:5 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNMB2-5:7
4.0 LINC00578:5
4.1 LINC00578:5
5.0 LINC00578:5
5.1 LINC00578:5
5.2 LINC00578:5