Transcript: LINC00578:12

Basic information

LNCipedia transcript ID: LINC00578:12 
LNCipedia gene ID: LINC00578
Location (hg38): chr3:177441965-177759084
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6929 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228221.1|MICT00000255091.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.7098 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:12 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00578:12
5.0 LINC00578:12
5.1 LINC00578:12
5.2 LINC00578:12