Transcript: LINC00578:11

Basic information

LNCipedia transcript ID: LINC00578:11 
LNCipedia gene ID: LINC00578
Location (hg38): chr3:177441965-177752094
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228221.1|ENST00000442937.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -65.7293 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:11 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00578:11
5.0 LINC00578:11
5.1 LINC00578:11
5.2 LINC00578:11