Transcript: LINC00575:5

Basic information

LNCipedia transcript ID: LINC00575:5 
LNCipedia gene ID: LINC00575
Location (hg38): chr4:82613158-82613537
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 268 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008514; NONHSAT097171
Alternative gene names: XLOC_003999; linc-TMEM150C;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.1558 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00575:5 no no no no

Available literature

  1. Schulz (2004), Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization., Cytogenet. Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCD5-1:5
3.1 lnc-SCD5-1:5
4.0 LINC00575:5
4.1 LINC00575:5
5.0 LINC00575:5
5.1 LINC00575:5
5.2 LINC00575:5