Transcript: LINC00538:3

Basic information

LNCipedia transcript ID: LINC00538:3 
HGNC Gene Symbol: LINC00538    
HGNC Full Gene Name: long intergenic non-protein coding RNA 538
Ensembl Gene ID: ENSG00000281664
Ensembl Transcript ID: ENST00000626109
Location (hg38): chr1:213924749-213926654
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1906 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626109.1
Alternative gene names: ENSG00000281664.1; LINC00538


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -107.0106 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00538:3 no no no no

Available literature

  1. Yang (2012), Characterization of a carcinogenesis-associated long non-coding RNA., RNA Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PTPN14-10:1
4.1 lnc-PTPN14-10:1
5.0 lnc-PTPN14-10:1
5.1 LINC00538:2
5.2 LINC00538:3