Transcript: LINC00536:6

Basic information

LNCipedia transcript ID: LINC00536:6 
LNCipedia gene ID: LINC00536
Ensembl Gene ID: ENSG00000253672
Ensembl Transcript ID: ENST00000523110
Location (hg38): chr8:116402543-116403757
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523110; ENST00000523110.1; RP11-536K17.1-001; OTTHUMT00000380911.1; NONHSAT128371
Alternative gene names: ENSG00000253672; RP11-536K17.1; ENSG00000253672.1; OTTHUMG00000164918.1; ; AC105177.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.5655 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00536:6 no no no no

Available literature

  1. Li (2015), Annular pancreas in Trichorhinophalangeal syndrome type II with 8q23.3-q24.12 interstitial deletion., Mol Cytogenet
  2. Crippa (2014), New case of trichorinophalangeal syndrome-like phenotype with a de novo t(2;8)(p16.1;q23.3) translocation which does not disrupt the TRPS1 gene., BMC Med. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF3H-2:1
3.1 lnc-EIF3H-2:1
4.0 lnc-EIF3H-2:1
4.1 LINC00536:6
5.0 LINC00536:6
5.1 LINC00536:6
5.2 LINC00536:6