Transcript: LINC00519:1

Basic information

LNCipedia transcript ID: LINC00519:1 
HGNC Gene Symbol: LINC00519    
HGNC Full Gene Name: long intergenic non-protein coding RNA 519
Ensembl Gene ID: ENSG00000258955
Ensembl Transcript ID: ENST00000557518
Location (hg38): chr14:51304416-51328386
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557518; ENST00000557518.1; LINC00519-001; OTTHUMT00000411624.1; NONHSAT036835
Alternative gene names: ENSG00000258955; RP11-1047D15.2; ENSG00000258955.1; LINC00519; OTTHUMG00000171090.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6607 non-coding 
CPAT coding probability 12.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00519:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM9-1:1
3.1 lnc-TRIM9-1:1
4.0 LINC00519:1
4.1 LINC00519:1
5.0 LINC00519:1
5.1 LINC00519:1
5.2 LINC00519:1