Transcript: LINC00513:14

Basic information

LNCipedia transcript ID: LINC00513:14 
LNCipedia gene ID: LINC00513
RefSeq ID: NR_109780
Location (hg38): chr7:130913464-130921946
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 947 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109780; NR_109780.1
Alternative gene names: LOC100506860


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.0618 non-coding 
CPAT coding probability 5.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00513:14 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKLN1-1:7
4.0 lnc-MKLN1-1:7
4.1 lnc-MKLN1-1:7
5.0 lnc-MKLN1-1:7
5.1 LINC00513:4
5.2 LINC00513:14