Transcript: LINC00513:12

Basic information

LNCipedia transcript ID: LINC00513:12 
HGNC Gene Symbol: LINC00513    
HGNC Full Gene Name: long intergenic non-protein coding RNA 513
Ensembl Gene ID: ENSG00000233559
Ensembl Transcript ID: ENST00000447430
Location (hg38): chr7:130853720-130928649
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1616 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447430; ENST00000447430.1; AC016831.7-001; OTTHUMT00000338093.1; NONHSAT123364
Alternative gene names: ENSG00000233559; AC016831.7; ENSG00000233559.1; OTTHUMG00000155022.1; LINC00513


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.554 non-coding 
CPAT coding probability 42.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00513:12 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKLN1-1:1
3.1 lnc-MKLN1-1:1
4.0 lnc-MKLN1-1:1
4.1 lnc-MKLN1-1:1
5.0 lnc-MKLN1-1:1
5.1 LINC00513:2
5.2 LINC00513:12