Transcript: LINC00494:10

Basic information

LNCipedia transcript ID: LINC00494:10 
LNCipedia gene ID: LINC00494
Location (hg38): chr20:48368675-48369331
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000545181; ENST00000545181.1; LINC00494-201; NONHSAT080144
Alternative gene names: ENSG00000235621; RP1-66N13.3; ENSG00000235621.3; LINC00494; OTTHUMG00000032682.1; ENSG00000235621.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.2837 non-coding 
CPAT coding probability 51.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00494:10 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-3:9
3.1 lnc-ARFGEF2-3:9
4.0 LINC00494:10
4.1 LINC00494:10
5.0 LINC00494:10
5.1 LINC00494:10
5.2 LINC00494:10