Transcript: LINC00492:1

Basic information

LNCipedia transcript ID: LINC00492:1 
HGNC Gene Symbol: LINC00492    
HGNC Full Gene Name: long intergenic non-protein coding RNA 492
Ensembl Gene ID: ENSG00000250958
Ensembl Transcript ID: ENST00000504436
RefSeq ID: NR_047462
Location (hg38): chr5:102581368-102617589
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 593 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009475; ENST00000504436; ENST00000504436.1; LINC00492-001; OTTHUMT00000370375.1; NONHSAT103030; NR_047462.1
Alternative gene names: XLOC_004493; linc-PAM-3; ENSG00000250958; CTD-2340E1.1; ENSG00000250958.1; LINC00492; OTTHUMG00000162776.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2857 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00492:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAM-3:1
3.1 lnc-PAM-3:1
4.0 LINC00492:1
4.1 LINC00492:1
5.0 LINC00492:1
5.1 LINC00492:1
5.2 LINC00492:1