Transcript: LINC00491:2

Basic information

LNCipedia transcript ID: LINC00491:2 
HGNC Gene Symbol: LINC00491    
HGNC Full Gene Name: long intergenic non-protein coding RNA 491
Ensembl Gene ID: ENSG00000250682
Ensembl Transcript ID: ENST00000508339
Location (hg38): chr5:102609557-102671464
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508339; ENST00000508339.1; LINC00491-002; OTTHUMT00000370372.1
Alternative gene names: ENSG00000250682; CTD-2340E1.3; ENSG00000250682.1; LINC00491; OTTHUMG00000162775.1; ENSG00000250682.5; BC008363


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.6203 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.134328358
seqAAMPRPASTRAWCAHALTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLVSSRGLLAQF
orfFrame6.682687833

In stringent set: no

Locus conservation

Locus conservation?
LINC00491:2 no no no no

Available literature

  1. Li (2014), Long non-coding RNAs expressed in pancreatic ductal adenocarcinoma and lncRNA BC008363 an independent prognostic factor in PDAC., Pancreatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLCO6A1-1:2
3.1 lnc-SLCO6A1-1:2
4.0 LINC00491:2
4.1 LINC00491:2
5.0 LINC00491:2
5.1 LINC00491:2
5.2 LINC00491:2