Transcript: LINC00488:1

Basic information

LNCipedia transcript ID: LINC00488:1 
LNCipedia gene ID: LINC00488
Location (hg38): chr3:109178165-109185260
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2523 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00005385
Alternative gene names: XLOC_002754; linc-FLJ25363-2; FLJ41232


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3582 non-coding 
CPAT coding probability 27.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00488:1 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAT1-2:1
3.1 lnc-TRAT1-3:2
4.0 LINC00488:1
4.1 LINC00488:1
5.0 LINC00488:1
5.1 LINC00488:1
5.2 LINC00488:1