Transcript: LINC00474:2

Basic information

LNCipedia transcript ID: LINC00474:2 
LNCipedia gene ID: LINC00474
Location (hg38): chr9:115888267-115925098
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00015571
Alternative gene names: XLOC_007836; linc-TNC-3; EST-YD1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.7858 non-coding 
CPAT coding probability 5.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00474:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAPPA-AS1-1:2
3.1 lnc-PAPPA-AS1-3:2
4.0 LINC00474:2
4.1 LINC00474:2
5.0 LINC00474:2
5.1 LINC00474:2
5.2 LINC00474:2