Transcript: LINC00473:6

Basic information

LNCipedia transcript ID: LINC00473:6 
HGNC Gene Symbol: LINC00473    
HGNC Full Gene Name: long intergenic non-protein coding RNA 473
Ensembl Gene ID: ENSG00000223414
Ensembl Transcript ID: ENST00000444465
Location (hg38): chr6:165908802-165987922
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 798 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444465; ENST00000444465.1; LINC00473-002; OTTHUMT00000043036.1; NONHSAT116016
Alternative gene names: ENSG00000223414; C6orf176; ENSG00000223414.2; LINC00473; OTTHUMG00000015990.2; bA142J11.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.5348 non-coding 
CPAT coding probability 4.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00473:6 no no no no

Available literature

  1. Pruunsild (2017), Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program., Cell Rep
  2. Liang (2016), Non-coding RNA LINC00473 mediates decidualization of human endometrial stromal cells in response to cAMP signaling., Sci Rep
  3. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  4. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics
  5. Reitmair (2012), C6orf176: a novel possible regulator of cAMP-mediated gene expression., Physiol. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDIM1-3:2
3.1 lnc-SDIM1-3:4
4.0 LINC00473:6
4.1 LINC00473:6
5.0 LINC00473:6
5.1 LINC00473:6
5.2 LINC00473:6