Transcript: LINC00473:3

Basic information

LNCipedia transcript ID: LINC00473:3 
LNCipedia gene ID: LINC00473
RefSeq ID: NR_026861
Location (hg38): chr6:165924048-165988039
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1123 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT116017; NR_026861; NR_026861.1
Alternative gene names: bA142J11.1; LINC00473


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1435 non-coding 
CPAT coding probability 4.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00473:3 no no no no

Available literature

  1. Pruunsild (2017), Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program., Cell Rep
  2. Liang (2016), Non-coding RNA LINC00473 mediates decidualization of human endometrial stromal cells in response to cAMP signaling., Sci Rep
  3. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  4. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics
  5. Reitmair (2012), C6orf176: a novel possible regulator of cAMP-mediated gene expression., Physiol. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SDIM1-3:9
4.0 LINC00473:3
4.1 LINC00473:3
5.0 LINC00473:3
5.1 LINC00473:3
5.2 LINC00473:3