Transcript: LINC00473:2

Basic information

LNCipedia transcript ID: LINC00473:2 
HGNC Gene Symbol: LINC00473    
HGNC Full Gene Name: long intergenic non-protein coding RNA 473
Ensembl Gene ID: ENSG00000223414
Ensembl Transcript ID: ENST00000455853
RefSeq ID: NR_026860
Location (hg38): chr6:165939456-165988039
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1822 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000455853; ENST00000455853.1; LINC00473-001; OTTHUMT00000043035.1; NONHSAT116018; NR_026860.1
Alternative gene names: ENSG00000223414; C6orf176; ENSG00000223414.2; LINC00473; OTTHUMG00000015990.2; bA142J11.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.8863 non-coding 
CPAT coding probability 66.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00473:2 no no no no

Available literature

  1. Pruunsild (2017), Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program., Cell Rep
  2. Liang (2016), Non-coding RNA LINC00473 mediates decidualization of human endometrial stromal cells in response to cAMP signaling., Sci Rep
  3. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  4. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics
  5. Reitmair (2012), C6orf176: a novel possible regulator of cAMP-mediated gene expression., Physiol. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDIM1-3:1
3.1 lnc-SDIM1-3:2
4.0 LINC00473:2
4.1 LINC00473:2
5.0 LINC00473:2
5.1 LINC00473:2
5.2 LINC00473:2

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