Transcript: LINC00472:11

Basic information

LNCipedia transcript ID: LINC00472:11 
HGNC Gene Symbol: LINC00472    
HGNC Full Gene Name: long intergenic non-protein coding RNA 472
Ensembl Gene ID: ENSG00000233237
Ensembl Transcript ID: ENST00000421704
Location (hg38): chr6:71416384-71420267
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 451 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421704; TCONS_00011518; ENST00000421704.1; LINC00472-005; OTTHUMT00000041165.2; NONHSAT113510; ENST00000421704.5
Alternative gene names: ENSG00000233237; XLOC_005764; linc-B3GAT2-4; C6orf155; ENSG00000233237.1; LINC00472; OTTHUMG00000015006.2; ENSG00000233237.2; ENSG00000233237.6; dJ288M22.3; FLJ13189


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.624 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00472:11 no no no no

Available literature

  1. Permuth (2017), Linc-ing Circulating Long Non-coding RNAs to the Diagnosis and Malignant Prediction of Intraductal Papillary Mucinous Neoplasms of the Pancreas., Sci Rep
  2. Fu (2016), Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer., Gynecol. Oncol.
  3. Dhir (2015), Microprocessor mediates transcriptional termination of long noncoding RNA transcripts hosting microRNAs., Nat. Struct. Mol. Biol.
  4. Shen (2015), Prognostic and predictive values of long non-coding RNA LINC00472 in breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-B3GAT2-2:5
3.1 lnc-B3GAT2-3:6
4.0 LINC00472:11
4.1 LINC00472:11
5.0 LINC00472:11
5.1 LINC00472:11
5.2 LINC00472:11