Transcript: LINC00471:1

Basic information

LNCipedia transcript ID: LINC00471:1 
HGNC Gene Symbol: LINC00471    
HGNC Full Gene Name: long intergenic non-protein coding RNA 471
Ensembl Gene ID: ENSG00000181798
Ensembl Transcript ID: ENST00000313064
RefSeq ID: NR_024079
Location (hg38): chr2:231508426-231514339
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1282 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000313064; ENST00000313064.2; LINC00471-001; OTTHUMT00000256963.2; NONHSAT077373; NR_024079; NR_024079.1
Alternative gene names: ENSG00000181798; C2orf52; ENSG00000181798.2; LINC00471; OTTHUMG00000133227.2; MGC43122


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2129 non-coding 
CPAT coding probability 36.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00471:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NMUR1-1:1
3.1 lnc-NMUR1-1:1
4.0 LINC00471:1
4.1 LINC00471:1
5.0 LINC00471:1
5.1 LINC00471:1
5.2 LINC00471:1