Transcript: LINC00461:53

Basic information

LNCipedia transcript ID: LINC00461:53 
LNCipedia gene ID: LINC00461
Location (hg38): chr5:88540511-88611750
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 736 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245526.4|ENST00000506664.1
Alternative gene names: EyeLinc1; Visc-1a; Visc-1b; Visc-2; LOC645323


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.1777 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00461:53 no no no no

Available literature

  1. Oliver (2015), Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype., Cereb. Cortex
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform
  4. Mustafi (2013), Evolutionarily conserved long intergenic non-coding RNAs in the eye., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00461:53
5.0 LINC00461:53
5.1 LINC00461:53
5.2 LINC00461:53