Transcript: LINC00461:16

Basic information

LNCipedia transcript ID: LINC00461:16 
HGNC Gene Symbol: LINC00461    
HGNC Full Gene Name: long intergenic non-protein coding RNA 461
Ensembl Gene ID: ENSG00000245526
Ensembl Transcript ID: ENST00000504246
Location (hg38): chr5:88666320-88676298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2300 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504246; ENST00000504246.1; LINC00461-002; OTTHUMT00000369800.1; NONHSAT102671; ENST00000504246.5
Alternative gene names: ENSG00000245526; CTC-547D20.1; ENSG00000245526.2; LINC00461; OTTHUMG00000162632.2; ENSG00000245526.4; ENSG00000245526.8; EyeLinc1; Visc-1a; Visc-1b; Visc-2; LOC645323; ENSG00000245526.9; ENSG00000245526.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.048 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00461:16 no no no no

Available literature

  1. Oliver (2015), Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype., Cereb. Cortex
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform
  4. Mustafi (2013), Evolutionarily conserved long intergenic non-coding RNAs in the eye., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEF2C-3:11
3.1 lnc-MEF2C-2:11
4.0 LINC00461:16
4.1 LINC00461:16
5.0 LINC00461:16
5.1 LINC00461:16
5.2 LINC00461:16