Transcript: LINC00461:15

Basic information

LNCipedia transcript ID: LINC00461:15 
LNCipedia gene ID: LINC00461
RefSeq ID: NR_024383
Location (hg38): chr5:88664445-88678445
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3359 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT102666; NR_024383; NR_024383.1
Alternative gene names: EyeLinc1; Visc-1a; Visc-1b; Visc-2; LOC645323; LINC00461


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.4904 non-coding 
CPAT coding probability 2.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00461:15 no no no no

Available literature

  1. Oliver (2015), Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype., Cereb. Cortex
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform
  4. Mustafi (2013), Evolutionarily conserved long intergenic non-coding RNAs in the eye., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MEF2C-2:21
4.0 LINC00461:15
4.1 LINC00461:15
5.0 LINC00461:15
5.1 LINC00461:15
5.2 LINC00461:15