Transcript: LINC00457:3

Basic information

LNCipedia transcript ID: LINC00457:3 
HGNC Gene Symbol: LINC00457    
HGNC Full Gene Name: long intergenic non-protein coding RNA 457
Ensembl Gene ID: ENSG00000225179
Ensembl Transcript ID: ENST00000428706
Location (hg38): chr13:34533846-34534350
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428706.1; LINC00457-002; OTTHUMT00000044454.1; NONHSAT033170; FPKM1_group_7626_transcript_1
Alternative gene names: ENSG00000225179.1; LINC00457; OTTHUMG00000016718.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -265.2491 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00457:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAB21L1-3:2
4.0 LINC00457:3
4.1 LINC00457:3
5.0 LINC00457:3
5.1 LINC00457:3
5.2 LINC00457:3