Transcript: LINC00442:2

Basic information

LNCipedia transcript ID: LINC00442:2 
LNCipedia gene ID: LINC00442
RefSeq ID: NR_026852
Location (hg38): chr13:19008259-19012634
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2138 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021467; NONHSAT032237; NR_026852; NR_026852.1
Alternative gene names: XLOC_010288; linc-MPHOSPH8-4; ; LINC00442


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4542 non-coding 
CPAT coding probability 87.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00442:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-3:1
3.1 lnc-RP11-408E5.4.1-4:3
4.0 LINC00442:2
4.1 LINC00442:2
5.0 LINC00442:2
5.1 LINC00442:2
5.2 LINC00442:2