Transcript: LINC00421:2

Basic information

LNCipedia transcript ID: LINC00421:2 
HGNC Gene Symbol: LINC00421    
HGNC Full Gene Name: long intergenic non-protein coding RNA 421
Ensembl Gene ID: ENSG00000236834
Ensembl Transcript ID: ENST00000413833
RefSeq ID: NR_034026
Location (hg38): chr13:19345049-19346749
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1054 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000413833; ENST00000413833.1; LINC00421-001; OTTHUMT00000044017.1; NONHSAT032269; NR_034026; NR_034026.1
Alternative gene names: ENSG00000236834; RP11-385E5.4; ENSG00000236834.1; LINC00421; OTTHUMG00000016488.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 84.0087 coding 
CPAT coding probability 16.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00421:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-2:2
3.1 lnc-RP11-408E5.4.1-3:1
4.0 LINC00421:2
4.1 LINC00421:2
5.0 LINC00421:2
5.1 LINC00421:2
5.2 LINC00421:2