Transcript: LINC00408:2

Basic information

LNCipedia transcript ID: LINC00408:2 
LNCipedia gene ID: LINC00408
Location (hg38): chr13:18905439-18926740
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1080 bp
Exons: 6
Sources: Broad Institute
Alternative transcript names: TCONS_00021478
Alternative gene names: XLOC_010286; linc-MPHOSPH8-6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.7685 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00408:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-5:2
3.1 lnc-RP11-408E5.4.1-6:2
4.0 LINC00408:2
4.1 LINC00408:2
5.0 LINC00408:2
5.1 LINC00408:2
5.2 LINC00408:2