Transcript: LINC00408:1

Basic information

LNCipedia transcript ID: LINC00408:1 
HGNC Gene Symbol: LINC00408    
HGNC Full Gene Name: long intergenic non-protein coding RNA 408
Ensembl Gene ID: ENSG00000226250
Ensembl Transcript ID: ENST00000447784
Location (hg38): chr13:18905439-18907810
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021523; ENST00000447784; ENST00000447784.1; RP11-442J17.2-001; OTTHUMT00000043992.1; NONHSAT032225
Alternative gene names: XLOC_010286; linc-MPHOSPH8-6; ENSG00000226250; RP11-442J17.2; ENSG00000226250.1; OTTHUMG00000016469.1; LINC00408;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.7685 non-coding 
CPAT coding probability 5.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00408:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-5:1
3.1 lnc-RP11-408E5.4.1-6:1
4.0 LINC00408:1
4.1 LINC00408:1
5.0 LINC00408:1
5.1 LINC00408:1
5.2 LINC00408:1