Transcript: LINC00404:1

Basic information

LNCipedia transcript ID: LINC00404:1 
HGNC Gene Symbol: LINC00404    
HGNC Full Gene Name: long intergenic non-protein coding RNA 404
Ensembl Gene ID: ENSG00000229520
Ensembl Transcript ID: ENST00000418660
Location (hg38): chr13:112106095-112106882
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021697; ENST00000418660; ENST00000418660.1; LINC00404-001; OTTHUMT00000045819.1; NONHSAT035251
Alternative gene names: XLOC_010727; linc-ANKRD10-2; ENSG00000229520; RP11-450H6.2; ENSG00000229520.1; LINC00404; OTTHUMG00000017364.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.7291 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00404:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBGCP3-8:1
3.1 lnc-TUBGCP3-9:1
4.0 LINC00404:1
4.1 LINC00404:1
5.0 LINC00404:1
5.1 LINC00404:1
5.2 LINC00404:1