Transcript: LINC00399:2

Basic information

LNCipedia transcript ID: LINC00399:2 
HGNC Gene Symbol: LINC00399    
HGNC Full Gene Name: long intergenic non-protein coding RNA 399
Ensembl Gene ID: ENSG00000229792
Ensembl Transcript ID: ENST00000439008
RefSeq ID: NR_126361
Location (hg38): chr13:109400696-109401641
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021596; ENST00000439008; ENST00000439008.1; RP11-460H14.1-001; OTTHUMT00000045754.1; NONHSAT035107; NR_126361.1
Alternative gene names: XLOC_010493; linc-COL4A2-5; ENSG00000229792; RP11-460H14.1; ENSG00000229792.1; OTTHUMG00000017337.1; LINC00399; TCONS_00021596


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5125 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00399:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO16-3:1
3.1 lnc-MYO16-3:1
4.0 LINC00399:2
4.1 LINC00399:2
5.0 LINC00399:2
5.1 LINC00399:2
5.2 LINC00399:2