Transcript: LINC00399:1

Basic information

LNCipedia transcript ID: LINC00399:1 
LNCipedia gene ID: LINC00399
Location (hg38): chr13:109400595-109401641
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 609 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT035106; FPKM1_group_8418_transcript_7
Alternative gene names: TCONS_00021596


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5125 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00399:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYO16-3:2
4.0 LINC00399:1
4.1 LINC00399:1
5.0 LINC00399:1
5.1 LINC00399:1
5.2 LINC00399:1