Transcript: LINC00397:3

Basic information

LNCipedia transcript ID: LINC00397:3 
HGNC Gene Symbol: LINC00397    
HGNC Full Gene Name: long intergenic non-protein coding RNA 397
Ensembl Gene ID: ENSG00000223404
Ensembl Transcript ID: ENST00000422074
Location (hg38): chr13:87801036-87803808
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT034599; ENST00000422074.2
Alternative gene names: ENSG00000223404.3; LINC00397; TCONS_00021582


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -248.669 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00397:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLITRK6-15:3
4.0 LINC00397:3
4.1 LINC00397:3
5.0 LINC00397:3
5.1 LINC00397:3
5.2 LINC00397:3