Transcript: LINC00396:4

Basic information

LNCipedia transcript ID: LINC00396:4 
HGNC Gene Symbol: LINC00396    
HGNC Full Gene Name: long intergenic non-protein coding RNA 396
Ensembl Gene ID: ENSG00000231428
Ensembl Transcript ID: ENST00000411690
RefSeq ID: NR_126387
Location (hg38): chr13:110053285-110054952
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT035134; ENST00000411690.2; NR_126387; NR_126387.1
Alternative gene names: ENSG00000231428.2; LINC00396;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.2781 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00396:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL4A2-2:4
4.0 LINC00396:4
4.1 LINC00396:4
5.0 LINC00396:4
5.1 LINC00396:4
5.2 LINC00396:4