Transcript: LINC00396:3

Basic information

LNCipedia transcript ID: LINC00396:3 
LNCipedia gene ID: LINC00396
Location (hg38): chr13:110053285-110054952
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021598; ENST00000411690; ENST00000411690.1; RP11-472K17.1-001; OTTHUMT00000045758.1; NONHSAT035133
Alternative gene names: XLOC_010496; linc-COL4A2-2; ENSG00000231428; RP11-472K17.1; ENSG00000231428.1; OTTHUMG00000017341.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.2781 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00396:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL4A2-2:2
3.1 lnc-COL4A2-2:2
4.0 LINC00396:3
4.1 LINC00396:3
5.0 LINC00396:3
5.1 LINC00396:3
5.2 LINC00396:3