Transcript: LINC00396:2

Basic information

LNCipedia transcript ID: LINC00396:2 
LNCipedia gene ID: LINC00396
Location (hg38): chr13:110023004-110054815
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3284 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021900; NONHSAT035126
Alternative gene names: XLOC_010496; linc-COL4A2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.3306 non-coding 
CPAT coding probability 12.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00396:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL4A2-2:1
3.1 lnc-COL4A2-2:1
4.0 LINC00396:2
4.1 LINC00396:2
5.0 LINC00396:2
5.1 LINC00396:2
5.2 LINC00396:2