Transcript: LINC00390:2

Basic information

LNCipedia transcript ID: LINC00390:2 
HGNC Gene Symbol: LINC00390    
HGNC Full Gene Name: long intergenic non-protein coding RNA 390
Ensembl Gene ID: ENSG00000226519
Ensembl Transcript ID: ENST00000432331
Location (hg38): chr13:44106378-44137236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021641; ENST00000432331; ENST00000432331.1; RP11-478K15.1-001; OTTHUMT00000044730.1; NONHSAT033482
Alternative gene names: XLOC_010585; linc-CCDC122-3; ENSG00000226519; RP11-478K15.1; ENSG00000226519.1; OTTHUMG00000016828.1; LINC00390; TCONS_00021641


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.9693 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00390:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C13orf44-1:2
3.1 lnc-C13orf44-1:2
4.0 LINC00390:2
4.1 LINC00390:2
5.0 LINC00390:2
5.1 LINC00390:2
5.2 LINC00390:2