Transcript: LINC00377:6

Basic information

LNCipedia transcript ID: LINC00377:6 
HGNC Gene Symbol: LINC00377    
HGNC Full Gene Name: long intergenic non-protein coding RNA 377
Ensembl Gene ID: ENSG00000229246
Ensembl Transcript ID: ENST00000456588
Location (hg38): chr13:81043670-81044442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021577; ENST00000456588; ENST00000456588.1; RP11-521J24.1-001; OTTHUMT00000045391.1; NONHSAT034520
Alternative gene names: XLOC_010455; linc-SLITRK5-8; ENSG00000229246; RP11-521J24.1; ENSG00000229246.1; OTTHUMG00000017144.1; LINC00377; TCONS_00021861


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.7257 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00377:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-10:2
3.1 lnc-NDFIP2-10:2
4.0 LINC00377:6
4.1 LINC00377:6
5.0 LINC00377:6
5.1 LINC00377:6
5.2 LINC00377:6