Transcript: LINC00345:1

Basic information

LNCipedia transcript ID: LINC00345:1 
HGNC Gene Symbol: LINC00345    
HGNC Full Gene Name: long intergenic non-protein coding RNA 345
Ensembl Gene ID: ENSG00000235660
Ensembl Transcript ID: ENST00000443679
Location (hg38): chr13:52484161-52484680
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021655; ENST00000443679; ENST00000443679.1; LINC00345-001; OTTHUMT00000045100.1; NONHSAT033994
Alternative gene names: XLOC_010621; linc-VPS36-2; ENSG00000235660; RP11-78J21.3; ENSG00000235660.1; LINC00345; OTTHUMG00000016974.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.4241 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00345:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VPS36-1:1
3.1 lnc-VPS36-1:1
4.0 LINC00345:1
4.1 LINC00345:1
5.0 LINC00345:1
5.1 LINC00345:1
5.2 LINC00345:1