Transcript: LINC00343:22

Basic information

LNCipedia transcript ID: LINC00343:22 
LNCipedia gene ID: LINC00343
Location (hg38): chr13:105729886-105731714
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 485 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000414368; ENST00000414368.1; LINC00344-001; OTTHUMT00000045722.1; NONHSAT140144
Alternative gene names: ENSG00000225562; NCRNA00344; ENSG00000225562.1; LINC00344; OTTHUMG00000017318.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.3308 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00343:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DAOA-2:1
3.1 lnc-DAOA-2:1
4.0 LINC00343:22
4.1 LINC00343:22
5.0 LINC00343:22
5.1 LINC00343:22
5.2 LINC00343:22