Transcript: LINC00320:18

Basic information

LNCipedia transcript ID: LINC00320:18 
HGNC Gene Symbol: LINC00320    
HGNC Full Gene Name: long intergenic non-protein coding RNA 320
Ensembl Gene ID: ENSG00000224924
Ensembl Transcript ID: ENST00000419299
Location (hg38): chr21:20743739-20803086
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 829 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028880; ENST00000419299; ENST00000419299.1; LINC00320-005; OTTHUMT00000170852.1; NONHSAT081364
Alternative gene names: XLOC_014019; linc-TMPRSS15-5; ENSG00000224924; NCRNA00320; ENSG00000224924.1; LINC00320; OTTHUMG00000078063.1; ENSG00000224924.2; ENSG00000224924.6; PRED14; FLJ37539


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.1662 non-coding 
CPAT coding probability 10.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00320:18 no no no no

Available literature

  1. Mills (2015), Long intervening non-coding RNA 00320 is human brain-specific and highly expressed in the cortical white matter., Neurogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-9:9
3.1 lnc-TMPRSS15-9:9
4.0 LINC00320:18
4.1 LINC00320:18
5.0 LINC00320:18
5.1 LINC00320:18
5.2 LINC00320:18