Transcript: LINC00314:1

Basic information

LNCipedia transcript ID: LINC00314:1 
LNCipedia gene ID: LINC00314
RefSeq ID: NR_027246
Location (hg38): chr21:28013363-28023209
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 2
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028741; NR_027246; NR_027246.1
Alternative gene names: XLOC_013899; linc-USP16-6; ; LINC00314


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.2728 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00314:1 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-4:1
3.1 lnc-USP16-4:1
4.0 LINC00314:1
4.1 LINC00314:1
5.0 LINC00314:1
5.1 LINC00314:1
5.2 LINC00314:1