Transcript: LINC00310:4

Basic information

LNCipedia transcript ID: LINC00310:4 
LNCipedia gene ID: LINC00310
RefSeq ID: NR_027266
Location (hg38): chr21:34180677-34189919
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1269 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028745; NONHSAT081862; NR_027266; NR_027266.1
Alternative gene names: XLOC_013923; linc-KCNE2-3; ; LINC00310


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.9731 non-coding 
CPAT coding probability 9.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00310:4 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS6-1:1
3.1 lnc-MRPS6-1:2
4.0 LINC00310:4
4.1 LINC00310:4
5.0 LINC00310:4
5.1 LINC00310:4
5.2 LINC00310:4

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