Transcript: LINC00310:11

Basic information

LNCipedia transcript ID: LINC00310:11 
HGNC Gene Symbol: LINC00310    
HGNC Full Gene Name: long intergenic non-protein coding RNA 310
Ensembl Gene ID: ENSG00000227456
Ensembl Transcript ID: ENST00000416145
Location (hg38): chr21:34180744-34188562
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 396 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028838; ENST00000416145; ENST00000416145.1; LINC00310-002; OTTHUMT00000194070.1; NONHSAT081865
Alternative gene names: XLOC_013923; linc-KCNE2-3; ENSG00000227456; NCRNA00310; ENSG00000227456.2; LINC00310; OTTHUMG00000086190.1; ENSG00000227456.3; ENSG00000227456.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.5167 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00310:11 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS6-1:5
3.1 lnc-MRPS6-1:5
4.0 LINC00310:11
4.1 LINC00310:11
5.0 LINC00310:11
5.1 LINC00310:11
5.2 LINC00310:11