Transcript: LINC00308:2

Basic information

LNCipedia transcript ID: LINC00308:2 
HGNC Gene Symbol: LINC00308    
HGNC Full Gene Name: long intergenic non-protein coding RNA 308
Ensembl Gene ID: ENSG00000184856
Ensembl Transcript ID: ENST00000419431
RefSeq ID: NR_038400
Location (hg38): chr21:22098617-22116528
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 727 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT081390; NR_038400; ENST00000419431.2; NR_038400.1
Alternative gene names: ENSG00000184856.6; LINC00308; PRED16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.9704 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00308:2 no no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCAM2-3:2
4.0 LINC00308:2
4.1 LINC00308:2
5.0 LINC00308:2
5.1 LINC00308:2
5.2 LINC00308:2