Transcript: LINC00308:1

Basic information

LNCipedia transcript ID: LINC00308:1 
LNCipedia gene ID: LINC00308
Location (hg38): chr21:22098617-22116528
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028765; ENST00000419431; ENST00000419431.1; LINC00308-001; OTTHUMT00000171046.1; NONHSAT081391
Alternative gene names: XLOC_013879; linc-JAM2-11; ENSG00000184856; NCRNA00308; ENSG00000184856.5; LINC00308; OTTHUMG00000078244.1; PRED16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.9704 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00308:1 no no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCAM2-3:1
3.1 lnc-NCAM2-3:1
4.0 LINC00308:1
4.1 LINC00308:1
5.0 LINC00308:1
5.1 LINC00308:1
5.2 LINC00308:1