Transcript: LINC00302:3

Basic information

LNCipedia transcript ID: LINC00302:3 
HGNC Gene Symbol: LINC00302    
HGNC Full Gene Name: long intergenic non-protein coding RNA 302
Ensembl Gene ID: ENSG00000176075
Ensembl Transcript ID: ENST00000444515
Location (hg38): chr1:152655477-152656804
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 302 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT006494; ENST00000444515.1
Alternative gene names: ENSG00000176075.6; LINC00302; ENSG00000176075.7; XP33


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.9902 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00302:3 no no no no

Available literature

  1. Gupta (2016), Landscape of Long Noncoding RNAs in Psoriatic and Healthy Skin., J. Invest. Dermatol.
  2. Zhao (1997), Positional cloning of novel skin-specific genes from the human epidermal differentiation complex., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCE2D-1:3
4.0 LINC00302:3
4.1 LINC00302:3
5.0 LINC00302:3
5.1 LINC00302:3
5.2 LINC00302:3