Transcript: LINC00302:2

Basic information

LNCipedia transcript ID: LINC00302:2 
LNCipedia gene ID: LINC00302
Location (hg38): chr1:152655477-152656790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 291 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536536; ENST00000536536.1; LINC00302-201; NONHSAT006492
Alternative gene names: ENSG00000176075; NCRNA00302; ENSG00000176075.6; LINC00302; OTTHUMG00000012386.1; XP33


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.9902 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00302:2 no no no no

Available literature

  1. Gupta (2016), Landscape of Long Noncoding RNAs in Psoriatic and Healthy Skin., J. Invest. Dermatol.
  2. Zhao (1997), Positional cloning of novel skin-specific genes from the human epidermal differentiation complex., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LCE2D-1:2
3.1 lnc-LCE2D-1:2
4.0 LINC00302:2
4.1 LINC00302:2
5.0 LINC00302:2
5.1 LINC00302:2
5.2 LINC00302:2