Transcript: LINC00222:4

Basic information

LNCipedia transcript ID: LINC00222:4 
HGNC Gene Symbol: LINC00222    
HGNC Full Gene Name: long intergenic non-protein coding RNA 222
Ensembl Gene ID: ENSG00000203801
Ensembl Transcript ID: ENST00000416104
Location (hg38): chr6:108751654-108768456
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1785 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011351; ENST00000416104; ENST00000416104.1; LINC00222-003; OTTHUMT00000317438.1; NONHSAT114362; ENST00000416104.5
Alternative gene names: XLOC_005421; linc-ARMC2; ENSG00000203801; NCRNA00222; ENSG00000203801.4; LINC00222; OTTHUMG00000015330.2; ENSG00000203801.8; dJ354J5.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.3811 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00222:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO3-1:4
3.1 lnc-FOXO3-1:2
4.0 LINC00222:4
4.1 LINC00222:4
5.0 LINC00222:4
5.1 LINC00222:4
5.2 LINC00222:4