Transcript: LINC00205:11

Basic information

LNCipedia transcript ID: LINC00205:11 
LNCipedia gene ID: LINC00205
Location (hg38): chr21:45288210-45289241
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029247; NONHSAT082939
Alternative gene names: XLOC_013981; linc-COL18A1-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.5019 non-coding 
CPAT coding probability 8.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00205:11 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB1-3:9
3.1 lnc-ADARB1-3:9
4.0 LINC00205:11
4.1 LINC00205:11
5.0 LINC00205:11
5.1 LINC00205:11
5.2 LINC00205:11