Transcript: LINC00189:10

Basic information

LNCipedia transcript ID: LINC00189:10 
LNCipedia gene ID: LINC00189
Location (hg38): chr21:29193460-29239271
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1150 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000215533.4|FTMT28300007147.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5807 non-coding 
CPAT coding probability 17.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00189:10 yes no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00189:10
5.0 LINC00189:10
5.1 LINC00189:10
5.2 LINC00189:10