Transcript: LINC00174:4

Basic information

LNCipedia transcript ID: LINC00174:4 
LNCipedia gene ID: LINC00174
RefSeq ID: NR_026873
Location (hg38): chr7:66376044-66400408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4424 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT121154; NR_026873; NR_026873.1
Alternative gene names: ; LINC00174


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.6314 non-coding 
CPAT coding probability 85.98% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00174:4 yes no no no

Available literature

  1. Shen (2018), STAT1-mediated upregulation of lncRNA LINC00174 functions a ceRNA for miR-1910-3p to facilitate colorectal carcinoma progression through regulation of TAZ., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GUSB-6:7
4.0 LINC00174:4
4.1 LINC00174:4
5.0 LINC00174:4
5.1 LINC00174:4
5.2 LINC00174:4